BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN04203 (UTR included)
(1768 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01038A1H06 1249 0.0
BF01010B1C10 143 1e-33
BF01054A1H02 84 9e-16
>BF01038A1H06
Length = 804
Score = 1249 bits (630), Expect = 0.0
Identities = 648/654 (99%)
Strand = Plus / Plus
Query: 530 tgccgacgaaggtcttatcacagttgatgtttcgaaagacgtcgtagaggattctatgac 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 tgccgacgaaggtcttatcacagttgatgtttcgaaagacgtcgtagaggattctatgac 207
Query: 590 aacaatgaaccaaagtgaaattccaccagatttaatacaatcagtaaatgatggcactga 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 aacaatgaaccaaagtgaaattccaccagatttaatacaatcagtaaatgatggcactga 267
Query: 650 agatgatgcgacgaaattaactcttgcttatgaaaatttatatgaactaccaagaactat 709
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agatgatgcaacgaaattaactcttgcttatgaaaatttatatgaactaccaagaactat 327
Query: 710 agtggagagattttcggatcacattatttatttggatatcagtcataacaaaattacaaa 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 agtggagagattttcggatcacattatttatttggatatcagtcataacaaaattacaaa 387
Query: 770 tttagatgcacttgttcatttcaagcacctgacgtctctcatagctgacgataaccccat 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tttagatgcacttgttcatttcaagcacctgacgtctctcatagctgacgataaccccat 447
Query: 830 caccgaaaattgtcttctgcctcccatgccaaagctgcaattgctatggttgaacagatg 889
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cactgaaaattgtcttctgcctcccatgccaaagctgcaattgctatggttgaacagatg 507
Query: 890 taagatatcgtctttatatccgtgggtgggtaaacttaaggagtcttgtccaaatttgca 949
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 508 taagatatcgtctttatatccgtgggtgggtaaacttaaagagtcttgtccaaatttgca 567
Query: 950 gtatctgtcccttatgggtaacccggcagcacctagttattttaatggtggaacgttcta 1009
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 568 gtatctgtcccttatgggtaacccggcagcgcctagttattttaatggtggaacgttcta 627
Query: 1010 tgagtacttacagtacaggcttttcgtcgtatcccagtttccctcccttacccacctgga 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tgagtacttacagtacaggcttttcgtcgtatcccagtttccctcccttacccacctgga 687
Query: 1070 tgacaggaaagtgacagatgaccagcgttcagaggcccacagattatataagcggccatt 1129
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 688 tgacaggaaagtgacagatgaccagcgttcagaggcccacagattatataagaggccatt 747
Query: 1130 actggaaaggatcatcaaacctggttcgggcggtctatcccaactgatgagcag 1183
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 actggaacggatcatcaaacctggttcgggcggtctatcccaactgatgagcag 801
>BF01010B1C10
Length = 690
Score = 143 bits (72), Expect = 1e-33
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 1 atggtgtgttaagaaaatgttaagttaataatttattttatttttctaacatattttata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 atggtgtgttaagaaaatgttaagttaataatttattttatttttctaacatattttata 13
Query: 61 tttccattgagt 72
||||||||||||
Sbjct: 12 tttccattgagt 1
>BF01054A1H02
Length = 850
Score = 83.8 bits (42), Expect = 9e-16
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 1630 aattgacttttaaggacttattagtgttcctttaagacgaactttattaacattacttac 1689
|||||| ||||||||| || | |||||| ||||||||| |||||||||||||||||||||
Sbjct: 135 aattgatttttaaggatttttcagtgtttctttaagacaaactttattaacattacttac 194
Query: 1690 aagtcacaat 1699
||| ||||||
Sbjct: 195 aagccacaat 204
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 257,737
Number of extensions: 6175
Number of successful extensions: 6175
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 6175
Number of HSP's successfully gapped: 3
Length of query: 1768
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1751
Effective length of database: 8,119,229
Effective search space: 14216769979
Effective search space used: 14216769979
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)