BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN12190 (UTR included)
(1759 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01013B1H03 585 e-167
>BF01013B1H03
Length = 634
Score = 585 bits (295), Expect = e-167
Identities = 319/329 (96%)
Strand = Plus / Plus
Query: 762 tttgcaatacccgggtcaatattcctgagtattctgtctggatttctgtttccattttat 821
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 111 tttgcaatacccgggtcaatattcctgagtatcctgtctggatttctgtttccattttat 170
Query: 822 cttgcacttgtgctcgtttgctgttgttcagctataggtgcaagtttgtgtttcttctta 881
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 171 cttgcacttgtgctcgtttgnnnnnnttcagctataggtgcaagtttgtgtttcttctta 230
Query: 882 tcaaatctattaggaaaaagattagttaggaaattcttcccagaaagggcagaacaatgg 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 231 tcaaatctattaggaaaaagattagttaggaaattcttcccagaaagggcagaactttgg 290
Query: 942 tcaaaggctgtgacgaaacacaaaaataacttgcttaattacattatatttttaagagtg 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tcaaaggctgtgacgaaacacaaaaataacttgcttaattacattatatttttaagagtg 350
Query: 1002 acaccattcttaccaaattggttcatcaatatgtctgctccagttattggggttcctctt 1061
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 351 acaccattcttaccaaattggttcatcaatatgtctgctccggttattggggttcctctt 410
Query: 1062 gtgccatttgctttagggacatttattgg 1090
|||||||||||||||||||||||||||||
Sbjct: 411 gtgccatttgctttagggacatttattgg 439
Score = 125 bits (63), Expect = 3e-28
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 1083 tttattggagtggcgccaccatcgtttgtggctatccaagctggtcagacccttcacact 1142
||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 tttataggagtggcgccaccgtcgtttgtggctatccaagctggtcagncccttcacact 620
Query: 1143 ctgacatctactag 1156
||||||||||||||
Sbjct: 621 ctgacatctactag 634
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 237,608
Number of extensions: 5225
Number of successful extensions: 5225
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 5225
Number of HSP's successfully gapped: 2
Length of query: 1759
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1742
Effective length of database: 8,119,229
Effective search space: 14143696918
Effective search space used: 14143696918
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)