BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN18982 (UTR included)
(1567 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01045B2A12 163 1e-39
>BF01045B2A12
Length = 787
Score = 163 bits (82), Expect = 1e-39
Identities = 136/154 (88%)
Strand = Plus / Minus
Query: 1414 gaaaagacaaaatgtaaccgattccaaatctacatatttgcagaaaaaaaaatatcattg 1473
||||| |||||||||| | || ||||||||||| ||||||||||||||||||| |||||
Sbjct: 784 gaaaaaacaaaatgtagctgactccaaatctactcatttgcagaaaaaaaaataccattg 725
Query: 1474 cccaaacagtcggcctgattcagtcgatgtattctgtacctgaatatgaagtttcaaaaa 1533
||||| ||||||| ||| |||||| | ||||||||||||||||||||||| |||| ||
Sbjct: 724 accaaatagtcggctcgatccagtcggtatattctgtacctgaatatgaagtgtcaataa 665
Query: 1534 aacgttatttagatcaggacgcagctcccttttt 1567
||||||||||||||||||||| |||||| |||||
Sbjct: 664 aacgttatttagatcaggacgtagctcctttttt 631
Score = 89.7 bits (45), Expect = 1e-17
Identities = 94/109 (86%), Gaps = 1/109 (0%)
Strand = Plus / Minus
Query: 1253 aaaagacaaaatgtagttgaatccaaatctacatatttgcagaaaaaaaa-taccattgc 1311
|||| ||||||||||| ||| ||||||||||| |||||||||||||||| ||||||||
Sbjct: 783 aaaaaacaaaatgtagctgactccaaatctactcatttgcagaaaaaaaaataccattga 724
Query: 1312 ccaaactgtcggctcgattcagtcaatgtattctgtaactgaacatgaa 1360
||||| ||||||||||| ||||| | ||||||||| ||||| |||||
Sbjct: 723 ccaaatagtcggctcgatccagtcggtatattctgtacctgaatatgaa 675
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 218,455
Number of extensions: 4160
Number of successful extensions: 4160
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 4159
Number of HSP's successfully gapped: 2
Length of query: 1567
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1550
Effective length of database: 8,119,229
Effective search space: 12584804950
Effective search space used: 12584804950
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)