BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN19685 (UTR included)
(3190 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01055A2F10 811 0.0
BF01005A1D02 716 0.0
>BF01055A2F10
Length = 718
Score = 811 bits (409), Expect = 0.0
Identities = 412/413 (99%)
Strand = Plus / Plus
Query: 447 ggcggcgcgggcgagcaacaatactcgctaagatggaacgacttccactcggcgatggtg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ggcggcgcgggcgagcaacaatactcgctaagatggaacgacttccactcggcgatggtg 365
Query: 507 tcgtcgttccggcgtttaagagacgaggaagactttgttgatgtcacactggcctgcgcc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tcgtcgttccggcgtttaagagacgaggaagactttgttgatgtcacactggcctgcgcc 425
Query: 567 ggggctacattcaccgcacacaaggtggtattgtcagcctgcagtccatattttagaaga 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ggggctacattcaccgcacacaaggtggtattgtcagcctgcagtccatattttagaaga 485
Query: 627 ttattaaaggcgaatccctgtcagcatccgatcgttattctaagggatgttcacgataaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttattaaaggcgaatccctgtcagcatccgatcgttattctaagggatgttcacgataaa 545
Query: 687 gacatggaaagtttactaaggtttatgtaccagggggaagttcacattggacaagagcaa 746
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 546 gacatggaaagtttactaaggtttatgtaccagggagaagttcacattggacaagagcaa 605
Query: 747 ctaaaagagttcctaagggccgcccagcttttgcaggtcagaggcttaacagacgttcct 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ctaaaagagttcctaagggccgcccagcttttgcaggtcagaggcttaacagacgttcct 665
Query: 807 cctccggttccaacactcgaccagaaagcgtcgccgtccgcgtcttcatggac 859
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cctccggttccaacactcgaccagaaagcgtcgccgtccgcgtcttcatggac 718
>BF01005A1D02
Length = 800
Score = 716 bits (361), Expect = 0.0
Identities = 370/374 (98%)
Strand = Plus / Plus
Query: 447 ggcggcgcgggcgagcaacaatactcgctaagatggaacgacttccactcggcgatggtg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ggcggcgcgggcgagcaacaatactcgctaagatggaacgacttccactcggcgatggtg 453
Query: 507 tcgtcgttccggcgtttaagagacgaggaagactttgttgatgtcacactggcctgcgcc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tcgtcgttccggcgtttaagagacgaggaagactttgttgatgtcacactggcctgcgcc 513
Query: 567 ggggctacattcaccgcacacaaggtggtattgtcagcctgcagtccatattttagaaga 626
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ggagctacattcaccgcacacaaggtggtattgtcagcctgcagtccatattttagaaga 573
Query: 627 ttattaaaggcgaatccctgtcagcatccgatcgttattctaagggatgttcacgataaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ttattaaaggcgaatccctgtcagcatccgatcgttattctaagggatgttcacgataaa 633
Query: 687 gacatggaaagtttactaaggtttatgtaccagggggaagttcacattggacaagagcaa 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gacatggaaagtttactaaggtttatgtaccagggggaagttcacattggacaagagcaa 693
Query: 747 ctaaaagagttcctaagggccgcccagcttttgcaggtcagaggcttaacagacgttcct 806
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 694 ctaaaagagttcctaagggccgcccagcttttgcaggtcagnnncttaacagacgttcct 753
Query: 807 cctccggttccaac 820
||||||||||||||
Sbjct: 754 cctccggttccaac 767
Score = 75.8 bits (38), Expect = 4e-13
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 1069 ccaacggacatgagctggcgcttttcggtcacgcgctc 1106
||||||||||||||||||||||||||||||||||||||
Sbjct: 763 ccaacggacatgagctggcgcttttcggtcacgcgctc 800
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 246,196
Number of extensions: 4125
Number of successful extensions: 4125
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 4125
Number of HSP's successfully gapped: 3
Length of query: 3190
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 3172
Effective length of database: 8,109,745
Effective search space: 25724111140
Effective search space used: 25724111140
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)