BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN08191 (UTR included)
(2479 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01016A2B02 80 2e-14
BF01043B1E03 68 7e-11
BF01049B1F01 68 7e-11
BF14_335_C4 68 7e-11
>BF01016A2B02
Length = 780
Score = 79.8 bits (40), Expect = 2e-14
Identities = 82/95 (86%), Gaps = 2/95 (2%)
Strand = Plus / Minus
Query: 896 tcaaatttggttaggttggaagaggagcttggacggtggaagtgtgttagatagggtccc 955
|||||||||||||||| | ||||||| |||||||| ||| ||| ||||||||||| ||
Sbjct: 341 tcaaatttggttaggtag--agaggagtttggacggcggaggtgagttagataggggcct 284
Query: 956 tttaaacctacacctgggtcgcaagtcccaggcac 990
|||| |||||||||| ||||||| ||||||||||
Sbjct: 283 cttaagcctacacctgagtcgcaattcccaggcac 249
>BF01043B1E03
Length = 830
Score = 67.9 bits (34), Expect = 7e-11
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 941 gttagatagggtccctttaaacctacacctgggtcgcaagtcccaggcac 990
||||||||||| ||||||||||||| |||||||| |||||||||| ||||
Sbjct: 380 gttagataggggccctttaaacctatacctgggttgcaagtcccaagcac 429
>BF01049B1F01
Length = 840
Score = 67.9 bits (34), Expect = 7e-11
Identities = 47/50 (94%), Gaps = 1/50 (2%)
Strand = Plus / Minus
Query: 941 gttagatagggtccctttaaacctacacctgggtcgcaagtcccaggcac 990
||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct: 660 gttagatagggcccctt-acacctacacctgggtcgcaagtcccaggcac 612
>BF14_335_C4
Length = 1491
Score = 67.9 bits (34), Expect = 7e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 957 ttaaacctacacctgggtcgcaagtcccaggcac 990
||||||||||||||||||||||||||||||||||
Sbjct: 1252 ttaaacctacacctgggtcgcaagtcccaggcac 1285
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 247,141
Number of extensions: 4827
Number of successful extensions: 4827
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 4825
Number of HSP's successfully gapped: 4
Length of query: 2479
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2462
Effective length of database: 8,119,229
Effective search space: 19989541798
Effective search space used: 19989541798
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)