BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN01615 (UTR included)
(1705 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01060B2E10 898 0.0
BF01021A2B11 84 8e-16
BF01019A1H08 84 8e-16
BF01016B1E06 72 3e-12
>BF01060B2E10
Length = 492
Score = 898 bits (453), Expect = 0.0
Identities = 462/465 (99%)
Strand = Plus / Plus
Query: 775 agatggcacaacagtactacctgatgtaccacgagcctatccccacagcacaattggtgc 834
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agatggcacatcagtactacctgatgtaccacgagcctatccccacagcacaattggtgc 60
Query: 835 aacgtgtcgctactgtcatgcaagagtacacacagtctggaggagttcgtccgtttggcg 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aacgtgtcgctactgtcatgcaagagtacacacagtctggaggagttcgtccgtttggcg 120
Query: 895 tctctctattgatctgtggatgggacagcggtagaccttacctgttccaatgtgatcctt 954
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tctctctactgatctgtggatgggacagcggtagaccttacctgttccaatgtgatcctt 180
Query: 955 ccggtgcatactttgcttggaaggccaccgcaatggggaagaattttaataacgggaaga 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 181 ccggtgcatactttgcttggaaggccaccgcaatggggaagaattttaataacggaaaga 240
Query: 1015 cattcttggagaagaggtacaccgaggagttggagctagatgacgctgtccacacagcga 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cattcttggagaagaggtacaccgaggagttggagctagatgacgctgtccacacagcga 300
Query: 1075 tcctgactctcaaggaaggtttcgaaggtcaaatgacggctgataatatagaggtcggga 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcctgactctcaaggaaggtttcgaaggtcaaatgacggctgataatatagaggtcggga 360
Query: 1135 tctgtgacgccgctggcttcagacgactggaaccagcccacgtcaaggactacctcgcca 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tctgtgacgccgctggcttcagacgactggaaccagcccacgtcaaggactacctcgcca 420
Query: 1195 atataccataatgtcatttatattaaaattataagtatttcatta 1239
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atataccataatgtcatttatattaaaattataagtatttcatta 465
>BF01021A2B11
Length = 729
Score = 83.8 bits (42), Expect = 8e-16
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 1640 gcgttaaacactcacctccaccgtccaagctcctctctacctaaccaaat 1689
||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 410 gcgttaaacgctcacctccaccgtccaagctcctctcttcctaaccaaat 361
>BF01019A1H08
Length = 504
Score = 83.8 bits (42), Expect = 8e-16
Identities = 78/89 (87%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 1550 accgtgcgggtgccgggtccttcg--ttacagggagaggggcttcaacagtgcatgtgac 1607
|||||||||||||||||||| ||| || |||||||||| ||||||||||||| || ||
Sbjct: 395 accgtgcgggtgccgggtccatcgcgttgcagggagaggagcttcaacagtgcctgggag 454
Query: 1608 ttgtgacccaggtttaggcttaaggggct 1636
||| ||||||||| |||| ||||||||||
Sbjct: 455 ttgcgacccaggtgtaggtttaaggggct 483
>BF01016B1E06
Length = 606
Score = 71.9 bits (36), Expect = 3e-12
Identities = 101/122 (82%), Gaps = 8/122 (6%)
Strand = Plus / Plus
Query: 1581 gagaggggcttcaacagtgcatgtgacttgtgacccaggtttaggcttaaggggc----- 1635
|||||| ||||||||||||| | || | | ||||||||| |||| |||||||||
Sbjct: 201 gagaggagcttcaacagtgccggggagtagcgacccaggtgtaggtttaaggggccctat 260
Query: 1636 -taaggcgttaaacactcacctccaccgtccaagctc--ctctctacctaaccaaatatg 1692
||| ||||||||| |||||||||||||||||| ||| |||||||||||||||||| ||
Sbjct: 261 ctaacgcgttaaacgctcacctccaccgtccaatctcctctctctacctaaccaaatttg 320
Query: 1693 aa 1694
||
Sbjct: 321 aa 322
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 198,807
Number of extensions: 4618
Number of successful extensions: 4618
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 4616
Number of HSP's successfully gapped: 4
Length of query: 1705
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1688
Effective length of database: 8,119,229
Effective search space: 13705258552
Effective search space used: 13705258552
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)