BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN12517 (UTR included)
(1498 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_1076_C1 1425 0.0
>BF14_1076_C1
Length = 893
Score = 1425 bits (719), Expect = 0.0
Identities = 751/761 (98%), Gaps = 3/761 (0%)
Strand = Plus / Plus
Query: 480 gaataaatttataaataaataatggacgaatattcgagagaaccctgtccgtggcgtatt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 gaataaatttataaataaataatggacgaatattcgagagaaccctgtccgtggcgtatt 192
Query: 540 ttagacgacgctggtggtgcatttttgatgggcgcaataggcggtggtatctttcactca 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ttagacgacgctggtggtgcatttttgatgggcgcaataggcggtggtatctttcactca 252
Query: 600 ataaaaggattcagaaatgctccaactggatttagcagaaaaatgcttggaagtttggca 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ataaaaggattcagaaatgctccaactggatttagcagaaaaatgcttggaagtttggca 312
Query: 660 gccatgaaggagcgatcgccaatagtaggtggtaactttgcagtttggggaggcatgttt 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gccatgaaggagcgatcgccaatagtaggtggtaactttgcagtttggggaggcatgttt 372
Query: 720 tcaacgattgattgctctctggtgtacttaagacaaaaggaagatccctggaactccata 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tcaacgattgattgctctctggtgtacttaagacaaaaggaagatccctggaactccata 432
Query: 780 atgagtggagcattaactggtgggatcctggcagctagaaatggtgttccagcgatggca 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 atgagtggagcattaactggtgggatcctggcagctagaaatggtgttccagcgatggca 492
Query: 840 ggtagtgctctagtagggggcattctgttagcgttaatagaaggcataggtataatgttc 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ggtagtgctctagtagggggcattctgttagcgttaatagaaggcataggtataatgttc 552
Query: 900 accagaatatcatcggagcagttcaaaccgcagcagccaatatttgaagacccctcagtt 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 accagaatatcatcggagcagttcaaaccgcagcagccaatatttgaagacccctcagtt 612
Query: 960 ttaggccagagtcagtcaccgggccaaagttttcaatagatacattaaattggtcaacat 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ttaggccagagtcagtcaccgggccaaagttttcaatagatacattaaattggtcaacat 672
Query: 1020 tgtgcagttatgtatttcaagttgaagtaatctattatattattgtatcttatt---gag 1076
|||||||| || ||| ||||||||||||||||||||||||||||| | |||||| |||
Sbjct: 673 tgtgcagtgatatatgtcaagttgaagtaatctattatattattggagcttattgcggag 732
Query: 1077 gattatataagttgtacgacatacagtaaatacaattaattcttgattatattgtcatta 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gattatataagttgtacgacatacagtaaatacaattaattcttgattatattgtcatta 792
Query: 1137 tatattacattttgatatattaactgcacaatttcacgtacaattcttgccattgggcat 1196
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 793 tatattacattttgatatattaactgcacaagttcacatacaattcttgccattgggcat 852
Query: 1197 agtttttgtttataaattatttttttatcccgatccaggat 1237
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 agtttttgtttataaattatttttttatcccgatccaggat 893
Score = 256 bits (129), Expect = 9e-68
Identities = 132/133 (99%)
Strand = Plus / Plus
Query: 261 tagaccttcaaccttgtctcttactgtaaaagaagtgcgaaagatgatgtaaaatagtaa 320
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 tagaccttcaaccttgtctcttacggtaaaagaagtgcgaaagatgatgtaaaatagtaa 60
Query: 321 tatatcgaaaatttacaaaatcaaaagtgaccaccagtagctataccaaaaatagtaata 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tatatcgaaaatttacaaaatcaaaagtgaccaccagtagctataccaaaaatagtaata 120
Query: 381 cttttatgttttg 393
|||||||||||||
Sbjct: 121 cttttatgttttg 133
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 200,554
Number of extensions: 4315
Number of successful extensions: 4315
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 4312
Number of HSP's successfully gapped: 2
Length of query: 1498
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1481
Effective length of database: 8,119,229
Effective search space: 12024578149
Effective search space used: 12024578149
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)