BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN19908 (UTR included)
(2401 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01060B1D11 96 3e-19
BF01047B2H03 82 5e-15
BF01056B1D01 72 5e-12
>BF01060B1D11
Length = 799
Score = 95.6 bits (48), Expect = 3e-19
Identities = 94/109 (86%), Gaps = 4/109 (3%)
Strand = Plus / Minus
Query: 508 tcccagatcagagtaatttagtaaga----tggggtaaagataccggaaagacttgctat 563
|||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||
Sbjct: 234 tcccagatcagagtaatttagtaagacgggaggggtaaagataccgaaaaaacttgctat 175
Query: 564 atctgtgggaaggcagttgaaactgctaagcatttgttagtgggatgta 612
|| || | ||||||||||| || ||||||||||||| | |||||||||
Sbjct: 174 atttgcgagaaggcagttggaattgctaagcatttgctgatgggatgta 126
>BF01047B2H03
Length = 758
Score = 81.8 bits (41), Expect = 5e-15
Identities = 74/85 (87%)
Strand = Plus / Minus
Query: 555 acttgctatatctgtgggaaggcagttgaaactgctaagcatttgttagtgggatgtaag 614
|||||||||||||| | | ||||||||| || |||| |||||||| | ||||||||| |
Sbjct: 364 acttgctatatctgcgaggaggcagttggaattgctgagcatttgctgatgggatgtagg 305
Query: 615 gtactcctggatagcggtcaatact 639
||||||||||||||||||||||||
Sbjct: 304 ctactcctggatagcggtcaatact 280
>BF01056B1D01
Length = 838
Score = 71.9 bits (36), Expect = 5e-12
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 490 atgcgttccaaatgactctcccagatcagagtaatttagtaaga 533
||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 102 atgcgttccaaatgactcttccaaatcagagtaatttagtaaga 59
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 295,319
Number of extensions: 19669
Number of successful extensions: 19669
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 19669
Number of HSP's successfully gapped: 3
Length of query: 2401
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2384
Effective length of database: 8,119,229
Effective search space: 19356241936
Effective search space used: 19356241936
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)