BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN19079 (UTR included)
(2539 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01030A1D06 1148 0.0
BF14_3257_C1 111 6e-24
>BF01030A1D06
Length = 742
Score = 1148 bits (579), Expect = 0.0
Identities = 594/600 (99%)
Strand = Plus / Plus
Query: 332 ggaatcttcacacaatggggaattaagaaatcgaaaagagaaatcaagcctcttaacaca 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 ggaatcttcacacaatggggaattaagaaatcgaaaagagaaatcaagcctcttaacaca 202
Query: 392 aaatggagctgacatagttcaaaataatataaataaatgcaaaactactaatgcaaggac 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 aaatggagctgacatagttcaaaataatataaataaatgcaaaactactaatgcaaggac 262
Query: 452 aataggattagtgtttatatcattactcctagatttacttgctttcactatgattctacc 511
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 263 aataggattagtgtttatatcattactcctagatttacttgcattcactatgattctacc 322
Query: 512 acttttaccatcattgcttgactactacaatagagaagaaggaaattccaacactctata 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acttttaccatcattgcttgactactacaatagagaagaaggaaattccaacactctata 382
Query: 572 tacatctttgcttcatgcagttcatagttttcaaaagttaacgggagttccggagagatt 631
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tacttctttgcttcatgcagttcatagttttcaaaagttaacgggagttccggagagatt 442
Query: 632 ttcatcagtattatttgggggtgctctaggatcaatgtatagttttctgcaatttctaac 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttcatcagtattatttgggggtgctctaggatcaatgtatagttttctgcaatttctaac 502
Query: 692 aagccccatagtggggagtctgtcggatgcttatggcagaaaacctatgctcttaatttg 751
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aagccccattgtggggagtctgtcggatgcttatggcagaaaacctatgctcttaatttg 562
Query: 752 tctaattggaatagcattatctcatgctttatggagttgtgccagcacattcagcctgtt 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tctaattggaatagcattatctcatgctttatggagttgtgccagcacattcagcctgtt 622
Query: 812 tgtactggcgagattcattggaggtttgagtaaagccaatgtcagcctcagtatggctgt 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgtactggcgagattcattggaggtttgagtaaagccaatgtcagcctcagtatggctgt 682
Query: 872 ggtcactgatgccacagatgagaaaactagagccaggggaatggcattggtgggtttagc 931
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 683 ggtcactgatgccacagatgnnnaaactagagccaggggaatggcattggtgggtttagc 742
>BF14_3257_C1
Length = 1221
Score = 111 bits (56), Expect = 6e-24
Identities = 77/84 (91%)
Strand = Plus / Minus
Query: 1829 gcaggtggttatgcggctgacacctgataatttcaactaccctcaattattagtgattct 1888
|||||||||||||||| |||||||| ||| |||||||||||||||||||||||| |||
Sbjct: 1218 gcaggtggttatgcgggtgacacctaatattttcaactaccctcaattattagttattga 1159
Query: 1889 aataataacaattgcgccgatata 1912
||| ||||||||||||||||||||
Sbjct: 1158 aattataacaattgcgccgatata 1135
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 372,115
Number of extensions: 9056
Number of successful extensions: 9056
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 9056
Number of HSP's successfully gapped: 2
Length of query: 2539
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2522
Effective length of database: 8,119,229
Effective search space: 20476695538
Effective search space used: 20476695538
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)