BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN14063 (UTR included)
(1849 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_1882_C1 1273 0.0
>BF14_1882_C1
Length = 770
Score = 1273 bits (642), Expect = 0.0
Identities = 669/678 (98%)
Strand = Plus / Plus
Query: 385 tcgatgatttcggaaactttgttcatagtatagtttctgatttacctgaaatttatcatt 444
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 1 tcgatgatttcggaaactttgttcctagtatcgtttctgatttacctgaaatttatcatt 60
Query: 445 ttcttcataaatgaatcgtaatttttagtcaaataactagttgaaataagtgcacaatga 504
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcttcataaatgaatcgtaatatttagtcaaataactagttgaaataagtgcacaatga 120
Query: 505 taaaagctattttagtttttaataatcatggcaagccgagattatcaaaattctatcagt 564
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taaaagctatattagtttttaataatcatggcaagccgagattatcaaaattctatcagt 180
Query: 565 actttaatgaagatatgcaacaacagataataaaagaaacgtttcaattagtgtcgaaaa 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 actttaatgaagatatgcaacaacagataataaaagaaacgtttcaattagtgtcgaaaa 240
Query: 625 gagatgacaatgtgtgcaattttctggaaggtggcagtctcatcggtgggtcagactaca 684
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 241 gagatgacaatgtgtgcaattttctggaaggcggcagtctcatcggtggttcagactaca 300
Query: 685 aattaatatacagacactatgcgacactatactttgtgttctgcgtcgattcctcggaga 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 301 aattaatatacagacactatgcgacactatactttgtgttctgcgtcgattcctcagaga 360
Query: 745 gtgagctgggaatactggatctcatacaggtgtttgttgaaaccctggacaaatgcttcg 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtgagctgggaatactggatctcatacaggtgtttgttgaaaccctggacaaatgcttcg 420
Query: 805 agaatgtctgcgagttagacctgatcttccacgcggatgctgcacaccaggtattggacg 864
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 421 agaatgtctgcgagttagacctgatcttccacgcggatgctgcacaccaggttttggacg 480
Query: 865 agctggtcatgggagggatggtgctccagactaatatggcagatatattatgcaggctcg 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agctggtcatgggagggatggtgctccagactaatatggcagatatattatgcaggctcg 540
Query: 925 ccgaacaaaacaaaatgcagaaagctgaggctggtatatccgcggctccggccagggccg 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ccgaacaaaacaaaatgcagaaagctgaggctggtatatccgcggctccggccagggccg 600
Query: 985 tgtctgctgtcaagagtatgaatctaccacagcagctgagggacattagactgcccgacc 1044
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 601 tgtctgctgtcaagagtatgaatctaccacagcagctgagggacattagattgcccgacc 660
Query: 1045 ttccgcaggccatcaagg 1062
||||||||||||||||||
Sbjct: 661 ttccgcaggccatcaagg 678
Score = 135 bits (68), Expect = 3e-31
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1060 aggcgtatcccgccacagtaacaatagccagcaacatattcaactcaatatacaccaacg 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 aggcgtatcccgccacagtaacaatagccagcaacatattcaactcaatatacaccaacg 762
Query: 1120 acaaatat 1127
||||||||
Sbjct: 763 acaaatat 770
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 271,718
Number of extensions: 6148
Number of successful extensions: 6148
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 6148
Number of HSP's successfully gapped: 2
Length of query: 1849
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1832
Effective length of database: 8,119,229
Effective search space: 14874427528
Effective search space used: 14874427528
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)