BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN14189 (UTR included)
(1369 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_1831_C1 1421 0.0
>BF14_1831_C1
Length = 850
Score = 1421 bits (717), Expect = 0.0
Identities = 767/784 (97%), Gaps = 5/784 (0%)
Strand = Plus / Plus
Query: 443 gattcgctttattttaattcaaaatcgagctggtaaaactcggttggcaaaatggtacat 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 gattcgctttattttaattcaaaatcgagctggtaaaactcggttggcaaaatggtacat 126
Query: 503 gaattttgatgatgatgagaaacagaaattaatagaagaagttcacgctgttgttacagt 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 gaattttgatgatgatgagaaacagaaattaatagaagaagttcacgctgttgttacagt 186
Query: 563 tcgtgacgccaaacataccaacttcgtggaatttagaaacttcaagatagtgtacagaag 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tcgtgacgccaaacataccaacttcgtggaatttagaaacttcaagatagtgtacagaag 246
Query: 623 atatgctggactatacttctgtatatgtgtggacgtgaatgacaacaacctctgctatct 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 atatgctggactatacttctgtatatgtgtggacgtgaatgacaacaacctctgctatct 306
Query: 683 tgaagctatccacaattttgttgaagtgctcaatgaatacttccacaacgtgtgtgaact 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tgaagctatccacaattttgttgaagtgctcaatgaatacttccacaacgtgtgtgaact 366
Query: 743 cgatcttgtatttaacttctataaggtgtacacagtggtggatgaaatgttcctcgctgg 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cgatcttgtatttaacttctataaggtgtacacagtggtggatgaaatgttcctcgctgg 426
Query: 803 tgagatccgggagacgtcccagaccaaagtcctgaagcaattgctgatgctcaactcctt 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tgagatccgggagacgtcccagaccaaagtcctgaagcaattgctgatgctcaactcctt 486
Query: 863 agagtgaacctcgagtctcacaccgtcagcttatggcggagctatggataatttatttgt 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 agagtgaacctcgagtctcacaccgtcagcttatggcggagctatggataatttatttgt 546
Query: 923 ttatgtgttaatgaatctattattataatcgtaaggtcattataatagttgagagctgat 982
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 547 ttatgtgttaatgaatctattattataatcgtaagatcattataatagttgagagctaat 606
Query: 983 agagatccacttctttgtatatagattggttttgtgttcaaacgatgtaaatacatttga 1042
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 607 agagatccccttctttgtatatagattggttttgtgttcaaacaatgtaaatacatttga 666
Query: 1043 ttgataatttgcaaatgttgaagtttttgcatgaaagtaaatacttatttgaaatattct 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ttgataatttgcaaatgttgaagtttttgcatgaaagtaaatacttatttgaaatattct 726
Query: 1103 gta---ttctacattaatgttatgaaaagtagcaaatactcattccatgttacgatagga 1159
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gtattcttctacattaatgttatgaaaagtagcaaatactcattccatgttacgatagga 786
Query: 1160 ggatgaggagttgattcgatgttgttctcttgtgtgtagcgacgc--ctttatcctatat 1217
||||| |||||| |||||||||||||| ||||||||||||| || ||||||||||
Sbjct: 787 ggatgnnnnnttgatttgatgttgttctcttntgtgtagcgacgcctctgtatcctatat 846
Query: 1218 ctca 1221
||||
Sbjct: 847 ctca 850
Score = 123 bits (62), Expect = 8e-28
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 304 ttttagaaggaggcgttttccaaaggactaggcaatttatctaaagctcgtcattcatca 363
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2 ttttagaaggaggcgttttccaaaggactaggcaatttatctaaagctcatcattcatca 61
Query: 364 ataatg 369
||||||
Sbjct: 62 ataatg 67
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 201,600
Number of extensions: 4580
Number of successful extensions: 4580
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 4578
Number of HSP's successfully gapped: 2
Length of query: 1369
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1352
Effective length of database: 8,119,229
Effective search space: 10977197608
Effective search space used: 10977197608
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)