BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN11890 (UTR included)
(4513 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01053B1F01 1616 0.0
>BF01053B1F01
Length = 854
Score = 1616 bits (815), Expect = 0.0
Identities = 840/847 (99%), Gaps = 1/847 (0%)
Strand = Plus / Plus
Query: 3547 atgtcgtacgtttctggcaggatctcggttatctcatcctgtatataacaggaaggccgg 3606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 atgtcgtacgtttctggcaggatctcggttatctcatcctgtatataacaggaaggccgg 67
Query: 3607 atatgcaacaaaggaaagtcgtctcctggttagcggaacataattttcctcacggtttag 3666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 atatgcaacaaaggaaagtcgtctcctggttagcggaacataattttcctcacggtttag 127
Query: 3667 tctttttctcggacggattctccaccgatcccttgggtcacaaagcggcgcatctacaca 3726
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 128 tctttttctcggacggattctccaccgaccctttgggtcacaaagcggcgcatctacaca 187
Query: 3727 gtctcataaccgaacatggagttatattccaagcagcctacggttcgggtaaagatatca 3786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 gtctcataaccgaacatggagttatattccaagcagcctacggttcgggtaaagatatca 247
Query: 3787 acgtgtaccacaactgtggtttgccgcagaagcaaatatatgcgattggtaagattagta 3846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 acgtgtaccacaactgtggtttgccgcagaagcaaatatatgcgattggtaagattagta 307
Query: 3847 agaaatataataacctagcgacaaccttgaatgacggttacgcttctcatttggcggact 3906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agaaatataataacctagcgacaaccttgaatgacggttacgcttctcatttggcggact 367
Query: 3907 tgaagcaaccaggggctgtgaggccggccagggggaacgccagacttctcgtaccgcggc 3966
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 368 tgaagcaaccaggggctgtgaggcctgccagggggaacgccagacttctcgtaccgcggc 427
Query: 3967 gtctactcgcatcagtaagtaattcctcttcccgtggacgtcgctgaacaatacattatc 4026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gtctactcgcatcagtaagtaattcctcttcccgtggacgtcgctgaacaatacattatc 487
Query: 4027 acagaaatatctattataatccaattagccagttacattttatttccatttcattgatat 4086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 acagaaatatctattataatccaattagccagttacattttatttccatttcattgatat 547
Query: 4087 ctttaaagattttgaaattaattctttttattccacagatacagataaaaaagatttata 4146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ctttaaagattttgaaattaattctttttattccacagatacagataaaaaagatttata 607
Query: 4147 ttttttcattgtgaataattattatacctatat-aaaaaaatatgtgtatgtattaaatg 4205
||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||
Sbjct: 608 ttttttcattgtgaataattattatacctatataaaaaaaaaaagtgtatgtattaaatg 667
Query: 4206 taggtctttatagacgtaaaatattatataagtttactcttcactgcgtaccttactaat 4265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 taggtctttatagacgtaaaatattatataagtttactcttcactgcgtaccttactaat 727
Query: 4266 ttattattatagtatattgtatcgtgttgtgtaaagtctgttactaatgggataatcgcc 4325
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 ttattattatagtatattgtatcgtgttgtgtaaagtctgttactaatgggataagcgcc 787
Query: 4326 cgtgtagtagtcgcgtattctattgttaatccatttggaaggctgggaatctcgtaatat 4385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 cgtgtagtagtcgcgtattctattgttaatccatttggaaggctgggaatctcgtaatat 847
Query: 4386 attcatc 4392
|||||||
Sbjct: 848 attcatc 854
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 503,489
Number of extensions: 9770
Number of successful extensions: 9770
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 9769
Number of HSP's successfully gapped: 1
Length of query: 4513
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 4495
Effective length of database: 8,109,745
Effective search space: 36453303775
Effective search space used: 36453303775
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)