BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN19991 (UTR included)
(3040 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01040B2E07 1516 0.0
>BF01040B2E07
Length = 800
Score = 1516 bits (765), Expect = 0.0
Identities = 790/800 (98%)
Strand = Plus / Plus
Query: 2215 cgcagtccggtaaaggagtgaagtcgtccaagaaacctagcgaggtcgcgccagaggaga 2274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgcagtccggtaaaggagtgaagtcgtccaagaaacctagcgaggtcgcgccagaggaga 60
Query: 2275 cgcagacggacttgaatcagccggggacgagcggcactgcgaggaatactaggaaacgaa 2334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgcagacggacttgaatcagccggggacgagcggcactgcgaggaatactaggaaacgaa 120
Query: 2335 aaatggaagtgaagaggcgcaccgtgagccgcgagagtaaaagactgaagagtgttgtta 2394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaatggaagtgaagaggcgcaccgtgagccgcgagagtaaaagactgaagagtgttgtta 180
Query: 2395 gtgttataaaagtcgcaggtgaatccagttcccgggctaacgtacagtcctcacatttca 2454
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 181 gtgttataaaagtcgcaggtgaatccagttcccggtctaacgtacagtcctcacatttca 240
Query: 2455 gcgttgtcattcgtaataaccgcgactgttcggattcggacgacgacatccctctgaatc 2514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gcgttgtcattcgtaataaccgcgactgttcggattcggacgacgacatccctctgaatc 300
Query: 2515 taaccataaccaagtcatcgtcatagacaactccattgtatcgaagtaatccacactact 2574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taaccataaccaagtcatcgtcatagacaactccattgtatcgaagtaatccacactact 360
Query: 2575 agttcatggatacgttttcttcgtagaatttgtagattattaatttaaaaaaattgaata 2634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agttcatggatacgttttcttcgtagaatttgtagattattaatttaaaaaaattgaata 420
Query: 2635 aaatattcatgaattttaagaattaagatttagaagataaaaaaatgtgataattttata 2694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaatattcatgaattttaagaattaagatttagaagataaaaaaatgtgataattttata 480
Query: 2695 ttatttatgatatagttctgtaattttattgatgcgtcgcatctcgaaacaaacacttaa 2754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttatttatgatatagttctgtaattttattgatgcgtcgcatctcgaaacaaacacttaa 540
Query: 2755 acgttaaaatataatacataattataaatagacaaaaataaaattggaaattgttattga 2814
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 541 acgttaaaatataatacataattataaatagacaaaaataaaattggaaatcgttattga 600
Query: 2815 aaatcaattcgaaatttaaaaattagtgcctaattattttgtcaagcgcataccataaag 2874
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 601 aaatcaattcgaaatttaaaaattacagcctaattattttgtcaagcgcataccataaag 660
Query: 2875 aagtcaaaacactggacggtgacttataaaattattataaaacaatcgaaacataattcc 2934
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aagtcaaaacactggacggtgacttataaaattattataaaacaatcgaaacataattcn 720
Query: 2935 aatttcaaaaacacagctgtctgtaacattgaagtgcttgagtgggatgcgaccagtatt 2994
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 721 nntttcaaaaacacagctgtctatnncattgaagtgcttgagtgggatgcgaccagtatt 780
Query: 2995 gtatgccattatgtaaatat 3014
||||||||||||||||||||
Sbjct: 781 gtatgccattatgtaaatat 800
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 342,681
Number of extensions: 7181
Number of successful extensions: 7181
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 7181
Number of HSP's successfully gapped: 1
Length of query: 3040
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 3022
Effective length of database: 8,109,745
Effective search space: 24507649390
Effective search space used: 24507649390
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)